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| Registros recuperados : 22 | |
| 5. |  | MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; BASSO, M. F.; HENNING, L. M. M.; FUGANTI-PAGLIARINI, R.; HARMON, F. G.; NEPOMUCENO, A. L. Functional characterization of a putative Glycine max ELF4 in transgenic Arabidopsis and its role during flowering control. Frontiers in Plant Science, v. 8, artigo 618, 2017.| Biblioteca(s): Embrapa Agroenergia. |
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| 6. | | MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; BASSO, M. F.; MERTZ-HENNING, L. M.; FUGANTI-PAGLIARINI, R.; HARMON, F. G.; NEPOMUCENO, A. L. Functional characterization of a putative Glycine max ELF4 in transgenic arabidopsis and its role during flowering control. Frontiers in Plant Science, v. 8, artigo 618, 2017.| Biblioteca(s): Embrapa Soja. |
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| 7. | | REIS, R. R.; NAKAYAMA, T.; MARIN, S. R. R.; MARINHO, J. P.; MARCOLINO-GOMES, J.; MERTZ-HENNING, L. M.; MOLINARI, H. B. C.; NEPOMUCENO, A. L. Engenharia genética de precisão para tolerância a seca em soja. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 3 p. 1 CD-ROM.| Biblioteca(s): Embrapa Soja. |
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| 8. | | GOMES, J. M.; NAKAYAMA, T. J.; REIS, R. R.; RODRIGUES, F. A.; MERTZ-HENNING, L. M.; FUGANTI-PAGLIARINI, R.; MOLINARI, H. B. C.; HARMON, F.; NEPOMUCENO, A. L. Gene expression and functional analysis of soybean genes with diurnal oscillation during drought stress. In: PLANT & ANIMAL GENOME XXIII, 2015, San Diego. PO 203| Biblioteca(s): Embrapa Soja. |
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| 9. | | MARCOLINO-GOMES, J.; RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; HARMONAND, F. G.; NEPOMUCENO, A. L. Gene expression networks and cis-elements combinatorial models in soybean: circadian clock and drought responses. In: WORKSHOP ON BIOTIC AND ABIOTIC STRESS TOLERANCE IN PLANTS, 2013, Ilhéus. The challenge for the 21st century: book of abstracts. [Brasília]: Embrapa: International Advanced Biology Consortium, 2013. p. 45-46.| Biblioteca(s): Embrapa Soja. |
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| 10. | | RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; LOBO, F. P.; HARMON, F. G.; NEPAMUCENO, A. L. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics, v. 16, n. 505, p. 2-19, 2015.| Biblioteca(s): Embrapa Agroenergia. |
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| 11. | | RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; LOBO, F. P.; HARMON, F. G.; NEPOMUCENO, A. L. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics, v. 16, n. 505, 2015. 19 p.| Biblioteca(s): Embrapa Soja. |
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| 12. | | NAKAYAMA, T. J.; RODRIGUES, F. A.; MARCOLINO, J.; MARCELINO, F. C.; SILVA, F. R. da; OLIVEIRA, A. C. B. de; EMYGDIO, B. M.; NEPOMUCENO, A. L.; NEUMAIER, N. Transcriptome analysis of soybean (Glycine max L. Merrill) root submited to hypoxic condition. In: CONGRESSO BRASILEIRO DE BIOTECNOLOGIA, 3., 2010, Fortaleza. Programa e resumos. Brasília, DF: SBBiotec, 2010. p. 154-155.| Biblioteca(s): Embrapa Soja. |
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| 13. | | MARTINS, P. K.; NAKAYAMA, T. J.; RIBEIRO, A. P.; DIAS, B. B. A.; NEPOMUCENO, A. L.; HARMON, F. G.; KOBAYASHI, A. K.; MOLINARI, H. B. C. Setaria viridis floral-dip: a simple and rapid Agrobacterium-mediated transformation method. Biotechnology Reports, v. 6, p. 61-63, 2015.| Biblioteca(s): Embrapa Agroenergia. |
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| 14. | | GOMES, J. M.; RODRIGUES, F. A.; PAGLIARINI, R. F.; BENDIX, C.; NAKAYAMA, T. J.; CELAYA, B.; MOLINARI, H. B. C.; OLIVEIRA, M. C. N. de; HARMON, F. G.; NEPOMUCENO, A. Diurnal oscillations of soybean circadian clock and drought responsive genes. Plos One, v. 9, n. 1, p. 1-13, 2014.| Biblioteca(s): Embrapa Agroenergia. |
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| 15. | | MARCOLINO-GOMES, J.; RODRIGUES, F. A.; FUGANTI-PAGLIARINI; BENDIX, C.; NAKAYAMA, T. J.; CELAYA, B.; MOLINARI, H. B. C.; OLIVEIRA, M. C. N. de; HARMON, F. G.; NEPOMUCENO, A. L. Diurnal oscillations of soybean circadian clock and drought responsive genes. Plos One, v. 9, n. 1, e86402, Jan. 2014. 13 p.| Biblioteca(s): Embrapa Soja. |
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| 16. | | MARCOLINO, J.; RODRIGUES, F. A.; AMARAL, L. C.; NAKAYAMA, T. J.; PEREIRA, R. M.; NASCIMENTO, L. C. do; BINNECK, E.; OLIVEIRA, M. C. N. de; MARCELINO, F. C.; ABDELNOOR, R. V.; NEUMAIER, N.; FARIAS, J. R. B.; NEPOMUCENO, A. L. Transcription factors expressed in soybean roots in response to water déficit. In: CONGRESSO BRASILEIRO DE BIOTECNOLOGIA, 3., 2010, Fortaleza. Programa e resumos. Brasília, DF: SBBiotec, 2010. p. 193-194.| Biblioteca(s): Embrapa Soja. |
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| 17. | | MARCOLINO-GOMES, J.; RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; NAKAYAMA, T. J.; REIS, R. R.; FARIAS, J. R. B.; HARMON, F. G.; MOLINARI, H. B. C.; MOLINARI, M. D. C.; NEPOMUCENO, A. L. Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day. Plos One, v. 10, n. 9, e0139051, 2015. 16 p.| Biblioteca(s): Embrapa Agroenergia; Embrapa Soja. |
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| 18. | | NAKAYAMA, T. J.; RODRIGUES, F. A.; NEUMAIER, N.; MARCELINO-GUIMARÃES, F. C.; FARIAS, J. R. B.; OLIVEIRA, M. C. N. de; BORÉM, A.; OLIVEIRA, A. C. B. de; EMYGDIO, B. M.; NEPOMUCENO, A. L. Reference genes for quantitative real-time polymerase chain reaction studies in soybean plants under hypoxic conditions. Genetics and Molecular Research, Ribeirão Preto, v. 13, n. 1, p. 860-871, 2014.| Biblioteca(s): Embrapa Clima Temperado; Embrapa Soja. |
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| 19. | | RODRIGUES, F. A.; MARCOLINO, J.; ENGELS, C.; NAKAYAMA, T. J.; FUGANTI, R.; MARIN, S. R.; FARIAS, J. R. B.; NEUMAIER, N.; MARCELINO, F. C.; BINNECK, E.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Prospecting soybean (Glycine max L. Merrill) genes expressed under drought conditions. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia. Charles Darwin: a origem das espécies: o livro que transformou a humanidade. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 92.| Biblioteca(s): Embrapa Soja. |
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| 20. | | RODRIGUES, F. A.; MARCOLINO, J.; NAKAYAMA, T. J.; FUGANTI, R.; ENGELS, C.; MARIN, S. R. R.; FARIAS, J. R. B.; NEUMAIER, N.; MARCELINO, F. C.; BINNECK, E.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Prospecting soybean (Glycine Max L. Merrill) genes expressed under drought conditions. In: INTERNATIONAL CONFERENCE ON INTEGRATED APPROACHES TO IMPROVE CROP PRODUCTION UNDER DROUGHT-PRONE ENVIRONMENTS, 3., 2009, Shangai. Abstracts... Shangai: Shangai Academy of Agricultural Sciences: Shangai Agrobiological Gene Center, 2009. p. 178, ref. P 5.35. INTERDROUGHT 2009.| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 22 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
11/12/2017 |
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Data da última atualização: |
10/01/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
NAKAYAMA, T. J.; RODRIGUES, F. A.; NEUMAIER, N.; GOMES, J. M.; MOLINARI, H. B. C.; SANTIAGO, T. R.; FORMIGHIERI, E. F.; BASSO, M. F.; FARIAS, J. R. B.; EMYGDIO, B. M.; OLIVEIRA, A. C. B. de; CAMPOS, A. D.; BORÉM, A.; HARMON, F. G.; MERTZ-HENNING, L. M.; NEPOMUCENO, A. L. |
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Afiliação: |
THIAGO J. NAKAYAMA, UFV; FABIANA A. RODRIGUES; NORMAN NEUMAIER, CNPSO; JULIANA MARCOLINO GOMES; HUGO BRUNO CORREA MOLINARI, CNPAE; THAÍS R. SANTIAGO; EDUARDO FERNANDES FORMIGHIERI, CNPAE; MARCOS F. BASSO; JOSE RENATO BOUCAS FARIAS, CNPSO; BEATRIZ MARTI EMYGDIO, CPACT; ANA CLAUDIA BARNECHE DE OLIVEIRA, CPACT; ANGELA DINIZ CAMPOS, CPACT; ALUÍZIO BORÉM, UFV; FRANK G. HARMON, University of California-Berkley; LILIANE MARCIA MERTZ HENNING, CNPSO; ALEXANDRE LIMA NEPOMUCENO, CNPSO. |
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Título: |
Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
PLoS ONE, v. 12, n. 11, e0187920, 2017. |
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DOI: |
10.1371/journal.pone.0187920 |
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Idioma: |
Português |
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Conteúdo: |
Soybean (Glycine max) is one of the major crops worldwide and flooding stress affects the production and expansion of cultivated areas. Oxygen is essential for mitochondrial aerobic respiration to supply the energy demand of plant cells. Because oxygen diffusion in water is 10,000 times lower than in air, partial (hypoxic) or total (anoxic) oxygen deficiency is important component of flooding. Even when oxygen is externally available, oxygen deficiency frequently occurs in bulky, dense or metabolically active tissues such as phloem, meristems, seeds, and fruits. In this study, we analyzed conserved and divergent root transcriptional responses between flood-tolerant Embrapa 45 and flood-sensitive BR 4 soybean cultivars under hypoxic stress conditions with RNA-seq. To understand how soybean genes evolve and respond to hypoxia, stable and differentially expressed genes were characterized structurally and compositionally comparing its mechanistic relationship. Between cultivars, Embrapa 45 showed less up- and more down-regulated genes, and stronger induction of phosphoglucomutase (Glyma05g34790), unknown protein related to N-terminal protein myristoylation (Glyma06g03430), protein suppressor of phyA-105 (Glyma06g37080), and fibrillin (Glyma10g32620). RNA-seq and qRT-PCR analysis of non-symbiotic hemoglobin (Glyma11g12980) indicated divergence in gene structure between cultivars. Transcriptional changes for genes in amino acids and derivative metabolic process suggest involvement of amino acids metabolism in tRNA modifications, translation accuracy/efficiency, and endoplasmic reticulum stress in both cultivars under hypoxia. Gene groups differed in promoter TATA box, ABREs (ABA-responsive elements), and CRT/DREs (C-repeat/dehydration-responsive elements) frequency. Gene groups also differed in structure, composition, and codon usage, indicating biological significances. Additional data suggests that cis-acting ABRE elements can mediate gene expression independent of ABA in soybean roots under hypoxia. MenosSoybean (Glycine max) is one of the major crops worldwide and flooding stress affects the production and expansion of cultivated areas. Oxygen is essential for mitochondrial aerobic respiration to supply the energy demand of plant cells. Because oxygen diffusion in water is 10,000 times lower than in air, partial (hypoxic) or total (anoxic) oxygen deficiency is important component of flooding. Even when oxygen is externally available, oxygen deficiency frequently occurs in bulky, dense or metabolically active tissues such as phloem, meristems, seeds, and fruits. In this study, we analyzed conserved and divergent root transcriptional responses between flood-tolerant Embrapa 45 and flood-sensitive BR 4 soybean cultivars under hypoxic stress conditions with RNA-seq. To understand how soybean genes evolve and respond to hypoxia, stable and differentially expressed genes were characterized structurally and compositionally comparing its mechanistic relationship. Between cultivars, Embrapa 45 showed less up- and more down-regulated genes, and stronger induction of phosphoglucomutase (Glyma05g34790), unknown protein related to N-terminal protein myristoylation (Glyma06g03430), protein suppressor of phyA-105 (Glyma06g37080), and fibrillin (Glyma10g32620). RNA-seq and qRT-PCR analysis of non-symbiotic hemoglobin (Glyma11g12980) indicated divergence in gene structure between cultivars. Transcriptional changes for genes in amino acids and derivative metabolic process suggest involvement... Mostrar Tudo |
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Palavras-Chave: |
Hipóxia; Inoxia. |
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Thesagro: |
Deficiência; Oxigênio; Soja. |
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Thesaurus NAL: |
Hypoxia; Soybeans. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/168633/1/journal.pone.0187920.pdf
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Marc: |
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100 1 $aNAKAYAMA, T. J.
245 $aInsights into soybean transcriptome reconfiguration under hypoxic stress$bFunctional, regulatory, structural, and compositional characterization.$h[electronic resource]
260 $c2017
520 $aSoybean (Glycine max) is one of the major crops worldwide and flooding stress affects the production and expansion of cultivated areas. Oxygen is essential for mitochondrial aerobic respiration to supply the energy demand of plant cells. Because oxygen diffusion in water is 10,000 times lower than in air, partial (hypoxic) or total (anoxic) oxygen deficiency is important component of flooding. Even when oxygen is externally available, oxygen deficiency frequently occurs in bulky, dense or metabolically active tissues such as phloem, meristems, seeds, and fruits. In this study, we analyzed conserved and divergent root transcriptional responses between flood-tolerant Embrapa 45 and flood-sensitive BR 4 soybean cultivars under hypoxic stress conditions with RNA-seq. To understand how soybean genes evolve and respond to hypoxia, stable and differentially expressed genes were characterized structurally and compositionally comparing its mechanistic relationship. Between cultivars, Embrapa 45 showed less up- and more down-regulated genes, and stronger induction of phosphoglucomutase (Glyma05g34790), unknown protein related to N-terminal protein myristoylation (Glyma06g03430), protein suppressor of phyA-105 (Glyma06g37080), and fibrillin (Glyma10g32620). RNA-seq and qRT-PCR analysis of non-symbiotic hemoglobin (Glyma11g12980) indicated divergence in gene structure between cultivars. Transcriptional changes for genes in amino acids and derivative metabolic process suggest involvement of amino acids metabolism in tRNA modifications, translation accuracy/efficiency, and endoplasmic reticulum stress in both cultivars under hypoxia. Gene groups differed in promoter TATA box, ABREs (ABA-responsive elements), and CRT/DREs (C-repeat/dehydration-responsive elements) frequency. Gene groups also differed in structure, composition, and codon usage, indicating biological significances. Additional data suggests that cis-acting ABRE elements can mediate gene expression independent of ABA in soybean roots under hypoxia.
650 $aHypoxia
650 $aSoybeans
650 $aDeficiência
650 $aOxigênio
650 $aSoja
653 $aHipóxia
653 $aInoxia
700 1 $aRODRIGUES, F. A.
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773 $tPLoS ONE$gv. 12, n. 11, e0187920, 2017.
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Embrapa Soja (CNPSO) |
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